PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01132g00339.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family G2-like
Protein Properties Length: 338aa    MW: 38086.5 Da    PI: 9.0233
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01132g00339.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.81.8e-2663112255
                   G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               prlrWtp+LH rFv+ave+LG    AtPk +l++m++kgL ++hvkSHLQ+YR+
  Peaxi162Scf01132g00339.1  63 PRLRWTPDLHLRFVHAVERLG----ATPKLVLQMMNIKGLNIAHVKSHLQMYRS 112
                               8*******************5....9***************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-2659113IPR009057Homeodomain-like
PROSITE profilePS5129411.29559115IPR017930Myb domain
SuperFamilySSF466892.15E-1261113IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-1863114IPR006447Myb domain, plants
PfamPF002491.0E-964111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEDSGETGCN YSKTSSTTGK NEDEEDLNAS SKIKDGGSSS NSTVEEESEK KHSVRPYVRS  60
KMPRLRWTPD LHLRFVHAVE RLGATPKLVL QMMNIKGLNI AHVKSHLQMY RSKKLDDQGQ  120
AIAHHRIFME GGDPNIYNLS QLPMLPTFHQ RLNSTFRYED ASWKSHGNWT RQGFYTTLSE  180
RIFGNNHGRE ANQDLYTRIP SFISERSTSQ TNVAKDEMGI FHIAAKAQAR ATCHGKGSFV  240
PPDLERTKNL QKLITPLKRK ASKYCDLDLN LSLAVKPRNE EIINHDDNND DNDNVSSLSL  300
SLSSPMSSSR VTRFKLEDAS NATTENSRRG ASTLDLTL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2401977e-38AC240197.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-208l2 map 10, complete sequence.
GenBankHG9754487e-38HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9754497e-38HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755217e-38HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
GenBankHG9755227e-38HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621839.11e-154PREDICTED: uncharacterized protein LOC104113394
RefseqXP_009621844.11e-154PREDICTED: uncharacterized protein LOC104113394
RefseqXP_009804663.11e-154PREDICTED: two-component response regulator ARR10-like
RefseqXP_016478876.11e-154PREDICTED: two-component response regulator ORR24-like
RefseqXP_016503328.11e-154PREDICTED: uncharacterized protein LOC107821409
RefseqXP_016503329.11e-154PREDICTED: uncharacterized protein LOC107821409
TrEMBLM1CJ601e-113M1CJ60_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000685081e-113(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43822141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-49G2-like family protein